J3_9I88_035
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UAA*UGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9I88|1|a|U|1194
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I88_035 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.1962
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9I88|1|a|U|1128
9I88|1|a|A|1129
9I88|1|a|A|1130
*
9I88|1|a|U|1166
9I88|1|a|G|1167
9I88|1|a|A|1168
9I88|1|a|C|1169
9I88|1|a|U|1170
9I88|1|a|G|1171
9I88|1|a|C|1172
*
9I88|1|a|G|1186
9I88|1|a|A|1187
9I88|1|a|G|1188
9I88|1|a|G|1189
9I88|1|a|A|1190
9I88|1|a|A|1191
9I88|1|a|G|1192
9I88|1|a|G|1193
9I88|1|a|U|1194
9I88|1|a|G|1195
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS2
- Chain j
- Small ribosomal subunit protein uS9
- Chain k
- Small ribosomal subunit protein uS10
- Chain o
- Small ribosomal subunit protein uS14B
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