J3_9I89_032
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I89_032 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.1569
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9I89|1|a|C|1075
9I89|1|a|G|1076
9I89|1|a|U|1077
9I89|1|a|C|1078
9I89|1|a|A|1079
9I89|1|a|G|1080
*
9I89|1|a|C|1119
9I89|1|a|G|1120
9I89|1|a|C|1121
9I89|1|a|A|1122
9I89|1|a|A|1123
9I89|1|a|C|1124
9I89|1|a|C|1125
*
9I89|1|a|G|1198
9I89|1|a|A|1199
9I89|1|a|U|1200
9I89|1|a|G|1201
9I89|1|a|A|1202
9I89|1|a|C|1203
9I89|1|a|G|1204
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS2
- Chain d
- Small ribosomal subunit protein uS3
- Chain f
- Small ribosomal subunit protein uS5
- Chain j
- Small ribosomal subunit protein uS9
- Chain k
- Small ribosomal subunit protein uS10
- Chain o
- Small ribosomal subunit protein uS14B
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