J3_9IOT_008

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9IOT|1|A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9IOT_008 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.0666

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9IOT|1|A|C|1298
9IOT|1|A|G|1299
9IOT|1|A|G|1300
9IOT|1|A|A|1301
9IOT|1|A|A|1302
9IOT|1|A|G|1303
*
9IOT|1|A|C|1625
9IOT|1|A|A|1626
9IOT|1|A|G|1627
*
9IOT|1|A|C|1639
9IOT|1|A|A|1640
9IOT|1|A|A|1641
9IOT|1|A|G|1642

Current chains

Chain A

23S rRNA

Nearby chains