3D structure

PDB id
9IOT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
9IOT|1|a|U|871, 9IOT|1|a|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9IOT_025 not in the Motif Atlas
Geometric match to J3_5J7L_004
Geometric discrepancy: 0.0611
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

9IOT|1|a|C|826
9IOT|1|a|U|827
9IOT|1|a|U|828
9IOT|1|a|G|829
*
9IOT|1|a|C|857
9IOT|1|a|G|858
9IOT|1|a|G|859
9IOT|1|a|A|860
9IOT|1|a|G|861
*
9IOT|1|a|C|868
9IOT|1|a|G|869
9IOT|1|a|U|870
9IOT|1|a|U|871
9IOT|1|a|A|872
9IOT|1|a|A|873
9IOT|1|a|G|874

Current chains

Chain a
16S rRNA

Nearby chains

Chain b
Small ribosomal subunit protein uS2
Chain h
Small ribosomal subunit protein uS8
Chain u
30S ribosomal protein S21

Coloring options:


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