J3_9J1M_013

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

9J1M|1|A|A|1515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_013 not in the Motif Atlas

Geometric match to J3_9DFE_012

Geometric discrepancy: 0.131

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

9J1M|1|A|U|1475
9J1M|1|A|C|1476
9J1M|1|A|G|1477
9J1M|1|A|G|1478
9J1M|1|A|G|1479
9J1M|1|A|A|1480
9J1M|1|A|C|1481
*
9J1M|1|A|G|1512
9J1M|1|A|A|1513
9J1M|1|A|C|1514
9J1M|1|A|A|1515
9J1M|1|A|A|1516
*
9J1M|1|A|U|1533
9J1M|1|A|A|1534

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23