J3_9J1M_025
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- UG*CACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9J1M|1|a|U|714
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_025 not in the Motif Atlas
- Geometric match to J3_4LFB_012
- Geometric discrepancy: 0.1531
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9J1M|1|a|U|663
9J1M|1|a|G|664
*
9J1M|1|a|C|708
9J1M|1|a|A|709
9J1M|1|a|C|710
9J1M|1|a|C|711
9J1M|1|a|G|712
9J1M|1|a|G|713
9J1M|1|a|U|714
9J1M|1|a|G|715
9J1M|1|a|G|716
*
9J1M|1|a|C|723
9J1M|1|a|G|724
9J1M|1|a|G|725
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain f
- Small ribosomal subunit protein bS6
- Chain k
- Small ribosomal subunit protein uS11
- Chain o
- Small ribosomal subunit protein uS15
- Chain r
- Small ribosomal subunit protein bS18A
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