J3_9J1M_026

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

9J1M|1|a|U|864, 9J1M|1|a|A|866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_026 not in the Motif Atlas

Geometric match to J3_5J7L_004

Geometric discrepancy: 0.1294

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9J1M|1|a|C|817
9J1M|1|a|U|818
9J1M|1|a|A|819
9J1M|1|a|G|820
*
9J1M|1|a|C|850
9J1M|1|a|G|851
9J1M|1|a|U|852
9J1M|1|a|A|853
9J1M|1|a|G|854
*
9J1M|1|a|C|861
9J1M|1|a|A|862
9J1M|1|a|U|863
9J1M|1|a|U|864
9J1M|1|a|A|865
9J1M|1|a|A|866
9J1M|1|a|G|867

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

Small ribosomal subunit protein uS8