J3_9JPO_025

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9JPO|1|a|A|1609, 9JPO|1|a|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JPO_025 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1128

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9JPO|1|a|C|1306
9JPO|1|a|A|1307
9JPO|1|a|A|1308
9JPO|1|a|G|1309
*
9JPO|1|a|C|1605
9JPO|1|a|C|1606
9JPO|1|a|C|1607
9JPO|1|a|A|1608
9JPO|1|a|A|1609
9JPO|1|a|A|1610
9JPO|1|a|C|1611
*
9JPO|1|a|G|1620
9JPO|1|a|U|1621
9JPO|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34