J3_9JPO_032

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9JPO|1|a|A|2518, 9JPO|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JPO_032 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1747

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9JPO|1|a|C|2517
9JPO|1|a|A|2518
9JPO|1|a|U|2519
9JPO|1|a|C|2520
*
9JPO|1|a|G|2545
9JPO|1|a|U|2546
9JPO|1|a|A|2547
*
9JPO|1|a|U|2561
9JPO|1|a|U|2562
9JPO|1|a|U|2563
9JPO|1|a|A|2564
9JPO|1|a|A|2565
9JPO|1|a|A|2566
9JPO|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14