J3_9K0Z_006
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUAG*CGUAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9K0Z|1|A|U|853, 9K0Z|1|A|A|855
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9K0Z_006 not in the Motif Atlas
- Geometric match to J3_5J7L_004
- Geometric discrepancy: 0.1313
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9K0Z|1|A|C|806
9K0Z|1|A|U|807
9K0Z|1|A|A|808
9K0Z|1|A|G|809
*
9K0Z|1|A|C|839
9K0Z|1|A|G|840
9K0Z|1|A|U|841
9K0Z|1|A|A|842
9K0Z|1|A|G|843
*
9K0Z|1|A|C|850
9K0Z|1|A|A|851
9K0Z|1|A|U|852
9K0Z|1|A|U|853
9K0Z|1|A|A|854
9K0Z|1|A|A|855
9K0Z|1|A|G|856
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS8
- Chain V
- Small ribosomal subunit protein uS2
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