J3_9K0Z_008
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGGA*UAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9K0Z_008 not in the Motif Atlas
- Geometric match to J3_4LFB_003
- Geometric discrepancy: 0.0742
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9K0Z|1|A|C|925
9K0Z|1|A|G|926
9K0Z|1|A|G|927
9K0Z|1|A|A|928
*
9K0Z|1|A|U|1216
9K0Z|1|A|A|1217
9K0Z|1|A|C|1218
*
9K0Z|1|A|G|1319
9K0Z|1|A|G|1320
9K0Z|1|A|A|1321
9K0Z|1|A|G|1322
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain I
- Small ribosomal subunit protein uS9
- Chain M
- Small ribosomal subunit protein uS13
Coloring options: