J3_9K0Z_011
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUUGACAU*GCAG*CUUAUG
- Length
- 18 nucleotides
- Bulged bases
- 9K0Z|1|A|U|1195
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9K0Z_011 not in the Motif Atlas
- Geometric match to J3_8B0X_029
- Geometric discrepancy: 0.2181
- The information below is about J3_8B0X_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9K0Z|1|A|U|972
9K0Z|1|A|U|973
9K0Z|1|A|U|974
9K0Z|1|A|G|975
9K0Z|1|A|A|976
9K0Z|1|A|C|977
9K0Z|1|A|A|978
9K0Z|1|A|U|979
*
9K0Z|1|A|G|1024
9K0Z|1|A|C|1025
9K0Z|1|A|A|1026
9K0Z|1|A|G|1027
*
9K0Z|1|A|C|1191
9K0Z|1|A|U|1192
9K0Z|1|A|U|1193
9K0Z|1|A|A|1194
9K0Z|1|A|U|1195
9K0Z|1|A|G|1196
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3
- Chain N
- Small ribosomal subunit protein uS14B
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