J3_9K0Z_016
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 9K0Z|1|A|U|1221, 9K0Z|1|A|U|1284
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9K0Z_016 not in the Motif Atlas
- Geometric match to J3_4LFB_009
- Geometric discrepancy: 0.1078
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
9K0Z|1|A|C|1218
9K0Z|1|A|A|1219
9K0Z|1|A|A|1220
9K0Z|1|A|U|1221
9K0Z|1|A|G|1222
*
9K0Z|1|A|C|1278
9K0Z|1|A|U|1279
9K0Z|1|A|C|1280
9K0Z|1|A|A|1281
9K0Z|1|A|G|1282
9K0Z|1|A|U|1283
9K0Z|1|A|U|1284
9K0Z|1|A|C|1285
*
9K0Z|1|A|G|1316
9K0Z|1|A|U|1317
9K0Z|1|A|C|1318
9K0Z|1|A|G|1319
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain M
- Small ribosomal subunit protein uS13
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