J3_9K0Z_029

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9K0Z|1|h|A|1827, 9K0Z|1|h|A|1828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K0Z_029 not in the Motif Atlas

Geometric match to J3_7A0S_007

Geometric discrepancy: 0.0992

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9K0Z|1|h|C|1421
9K0Z|1|h|A|1422
9K0Z|1|h|A|1423
9K0Z|1|h|G|1424
*
9K0Z|1|h|C|1823
9K0Z|1|h|C|1824
9K0Z|1|h|C|1825
9K0Z|1|h|A|1826
9K0Z|1|h|A|1827
9K0Z|1|h|A|1828
9K0Z|1|h|C|1829
*
9K0Z|1|h|G|1838
9K0Z|1|h|U|1839
9K0Z|1|h|G|1840

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein bL34