J3_9K0Z_030

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

9K0Z|1|h|C|1460, 9K0Z|1|h|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K0Z_030 not in the Motif Atlas

Geometric match to J3_7A0S_018

Geometric discrepancy: 0.1534

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9K0Z|1|h|U|1459
9K0Z|1|h|C|1460
9K0Z|1|h|G|1461
9K0Z|1|h|G|1462
9K0Z|1|h|G|1463
9K0Z|1|h|A|1464
9K0Z|1|h|C|1465
*
9K0Z|1|h|G|1496
9K0Z|1|h|A|1497
9K0Z|1|h|C|1498
9K0Z|1|h|A|1499
9K0Z|1|h|A|1500
*
9K0Z|1|h|U|1517
9K0Z|1|h|A|1518

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23