J3_9K10_011

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAAG*CAG*UAAG

Length

13 nucleotides

Bulged bases

9K10|1|A|A|1417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K10_011 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.1108

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9K10|1|A|C|1413
9K10|1|A|G|1414
9K10|1|A|A|1415
9K10|1|A|A|1416
9K10|1|A|A|1417
9K10|1|A|G|1418
*
9K10|1|A|C|1843
9K10|1|A|A|1844
9K10|1|A|G|1845
*
9K10|1|A|U|1857
9K10|1|A|A|1858
9K10|1|A|A|1859
9K10|1|A|G|1860

Current chains

Chain A

23S ribosomal RNA

Nearby chains