J3_9K10_012

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9K10|1|A|A|1827, 9K10|1|A|A|1828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K10_012 not in the Motif Atlas

Geometric match to J3_7A0S_007

Geometric discrepancy: 0.0754

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9K10|1|A|C|1421
9K10|1|A|A|1422
9K10|1|A|A|1423
9K10|1|A|G|1424
*
9K10|1|A|C|1823
9K10|1|A|C|1824
9K10|1|A|C|1825
9K10|1|A|A|1826
9K10|1|A|A|1827
9K10|1|A|A|1828
9K10|1|A|C|1829
*
9K10|1|A|G|1838
9K10|1|A|U|1839
9K10|1|A|G|1840

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34