J3_9K10_013

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

9K10|1|A|C|1460, 9K10|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K10_013 not in the Motif Atlas

Geometric match to J3_7A0S_018

Geometric discrepancy: 0.1522

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

9K10|1|A|U|1459
9K10|1|A|C|1460
9K10|1|A|G|1461
9K10|1|A|G|1462
9K10|1|A|G|1463
9K10|1|A|A|1464
9K10|1|A|C|1465
*
9K10|1|A|G|1496
9K10|1|A|A|1497
9K10|1|A|C|1498
9K10|1|A|A|1499
9K10|1|A|A|1500
*
9K10|1|A|U|1517
9K10|1|A|A|1518

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L23