J3_9K10_016
3D structure
- PDB id
- 9K10 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 50S ribosome subunit complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 9K10|1|A|A|2421
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9K10_016 not in the Motif Atlas
- Geometric match to J3_7A0S_009
- Geometric discrepancy: 0.0965
- The information below is about J3_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
9K10|1|A|U|2314
9K10|1|A|U|2315
9K10|1|A|G|2316
*
9K10|1|A|C|2419
9K10|1|A|U|2420
9K10|1|A|A|2421
9K10|1|A|A|2422
9K10|1|A|C|2423
*
9K10|1|A|G|2447
9K10|1|A|G|2448
9K10|1|A|A|2449
9K10|1|A|C|2450
9K10|1|A|A|2451
9K10|1|A|G|2452
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain H
- 50S ribosomal protein L9
- Chain Y
- 50S ribosomal protein L28
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