J3_9KMY_002

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9KMY|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|A|40
9KMY|1|2|G|41
9KMY|1|2|A|42
9KMY|1|2|U|43
9KMY|1|2|U|44
9KMY|1|2|A|45
9KMY|1|2|A|46
9KMY|1|2|G|47
*
9KMY|1|2|C|479
9KMY|1|2|G|480
9KMY|1|2|C|481
9KMY|1|2|G|482
9KMY|1|2|C|483
9KMY|1|2|A|484
9KMY|1|2|A|485
9KMY|1|2|A|486
9KMY|1|2|U|487
*
9KMY|1|2|A|512
9KMY|1|2|G|513
9KMY|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12