J3_9KZU_037

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9KZU|1|S2|C|1273, 9KZU|1|S2|G|1274, 9KZU|1|S2|G|1507, 9KZU|1|S2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|S2|C|1272
9KZU|1|S2|C|1273
9KZU|1|S2|G|1274
9KZU|1|S2|G|1275
9KZU|1|S2|A|1276
9KZU|1|S2|C|1277
*
9KZU|1|S2|G|1320
9KZU|1|S2|G|1321
9KZU|1|S2|G|1322
9KZU|1|S2|U|1323
9KZU|1|S2|G|1324
*
9KZU|1|S2|U|1504
9KZU|1|S2|U|1505
9KZU|1|S2|A|1506
9KZU|1|S2|G|1507
9KZU|1|S2|A|1508
9KZU|1|S2|U|1509
9KZU|1|S2|G|1510

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29

Chain sh

Ubiquitin-40S ribosomal protein S27a