J3_9MKK_011

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

9MKK|1|A|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MKK_011 not in the Motif Atlas

Geometric match to J3_4LFB_017

Geometric discrepancy: 0.1322

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9MKK|1|A|U|1073
9MKK|1|A|G|1074
*
9MKK|1|A|U|1083
9MKK|1|A|G|1084
9MKK|1|A|U|1085
9MKK|1|A|U|1086
*
9MKK|1|A|G|1099
9MKK|1|A|C|1100
9MKK|1|A|A|1101
9MKK|1|A|A|1102

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain E

Small ribosomal subunit protein uS5

Chain U

Small ribosomal subunit protein bS21