3D structure

PDB id
9MKK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
9MKK|1|a|U|34, 9MKK|1|a|U|448, 9MKK|1|a|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9MKK_015 not in the Motif Atlas
Geometric match to J3_5J7L_067
Geometric discrepancy: 0.0979
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

9MKK|1|a|C|32
9MKK|1|a|C|33
9MKK|1|a|U|34
9MKK|1|a|G|35
*
9MKK|1|a|C|445
9MKK|1|a|G|446
9MKK|1|a|A|447
9MKK|1|a|U|448
9MKK|1|a|A|449
9MKK|1|a|G|450
9MKK|1|a|U|451
9MKK|1|a|G|452
9MKK|1|a|A|453
9MKK|1|a|A|454
9MKK|1|a|C|455
9MKK|1|a|C|456
9MKK|1|a|A|457
9MKK|1|a|G|458
9MKK|1|a|U|459
9MKK|1|a|A|460
9MKK|1|a|C|461
*
9MKK|1|a|G|468
9MKK|1|a|G|469
9MKK|1|a|A|470
9MKK|1|a|A|471
9MKK|1|a|A|472
9MKK|1|a|G|473

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain e
Large ribosomal subunit protein uL4
Chain p
50S ribosomal protein L20
Chain s
50S ribosomal protein L23

Coloring options:


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