J3_9MKK_023

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9MKK|1|a|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MKK_023 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1113

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9MKK|1|a|C|2091
9MKK|1|a|U|2092
9MKK|1|a|G|2093
*
9MKK|1|a|C|2196
9MKK|1|a|U|2197
9MKK|1|a|A|2198
9MKK|1|a|A|2199
9MKK|1|a|C|2200
*
9MKK|1|a|G|2223
9MKK|1|a|G|2224
9MKK|1|a|A|2225
9MKK|1|a|C|2226
9MKK|1|a|A|2227
9MKK|1|a|G|2228

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28