J3_9MKK_027

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9MKK|1|a|A|2518, 9MKK|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MKK_027 not in the Motif Atlas

Geometric match to J3_4WF9_009

Geometric discrepancy: 0.1584

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9MKK|1|a|C|2517
9MKK|1|a|A|2518
9MKK|1|a|U|2519
9MKK|1|a|C|2520
*
9MKK|1|a|G|2545
9MKK|1|a|U|2546
9MKK|1|a|A|2547
*
9MKK|1|a|U|2561
9MKK|1|a|U|2562
9MKK|1|a|U|2563
9MKK|1|a|A|2564
9MKK|1|a|A|2565
9MKK|1|a|A|2566
9MKK|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

Large ribosomal subunit protein uL14