J3_9MOR_018

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

9MOR|1|2|C|48, 9MOR|1|2|A|50, 9MOR|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MOR_018 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1746

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9MOR|1|2|G|46
9MOR|1|2|C|47
9MOR|1|2|C|48
9MOR|1|2|U|49
9MOR|1|2|A|50
9MOR|1|2|A|51
9MOR|1|2|C|52
*
9MOR|1|2|G|359
9MOR|1|2|G|360
9MOR|1|2|G|361
9MOR|1|2|G|362
9MOR|1|2|A|363
9MOR|1|2|A|364
9MOR|1|2|U|365
9MOR|1|2|A|366
9MOR|1|2|U|367
*
9MOR|1|2|A|393
9MOR|1|2|G|394
9MOR|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain u

30S ribosomal protein S16