J3_9MOR_031

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9MOR|1|2|U|1240, 9MOR|1|2|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MOR_031 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.2962

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9MOR|1|2|C|1237
9MOR|1|2|A|1238
9MOR|1|2|A|1239
9MOR|1|2|U|1240
9MOR|1|2|G|1241
*
9MOR|1|2|C|1296
9MOR|1|2|G|1297
9MOR|1|2|U|1298
9MOR|1|2|A|1299
9MOR|1|2|G|1300
9MOR|1|2|U|1301
9MOR|1|2|C|1302
9MOR|1|2|C|1303
*
9MOR|1|2|G|1334
9MOR|1|2|U|1335
9MOR|1|2|C|1336
9MOR|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13