J3_9MQ4_024

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9MQ4|1|2|U|871, 9MQ4|1|2|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MQ4_024 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0882

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9MQ4|1|2|C|826
9MQ4|1|2|U|827
9MQ4|1|2|U|828
9MQ4|1|2|G|829
*
9MQ4|1|2|C|857
9MQ4|1|2|G|858
9MQ4|1|2|G|859
9MQ4|1|2|A|860
9MQ4|1|2|G|861
*
9MQ4|1|2|C|868
9MQ4|1|2|G|869
9MQ4|1|2|U|870
9MQ4|1|2|U|871
9MQ4|1|2|A|872
9MQ4|1|2|A|873
9MQ4|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

Small ribosomal subunit protein uS8

Chain z

30S ribosomal protein S21