J3_9MTP_003

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9MTP|1|1A|U|448, 9MTP|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTP_003 not in the Motif Atlas

Geometric match to J3_9DFE_003

Geometric discrepancy: 0.04

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

9MTP|1|1A|C|32
9MTP|1|1A|U|33
9MTP|1|1A|C|34
9MTP|1|1A|G|35
*
9MTP|1|1A|C|445
9MTP|1|1A|G|446
9MTP|1|1A|A|447
9MTP|1|1A|U|448
9MTP|1|1A|A|449
9MTP|1|1A|G|450
9MTP|1|1A|C|451
9MTP|1|1A|G|452
9MTP|1|1A|C|453
9MTP|1|1A|A|454
9MTP|1|1A|C|455
9MTP|1|1A|C|456
9MTP|1|1A|A|457
9MTP|1|1A|G|458
9MTP|1|1A|U|459
9MTP|1|1A|A|460
9MTP|1|1A|C|461
*
9MTP|1|1A|G|468
9MTP|1|1A|G|469
9MTP|1|1A|A|470
9MTP|1|1A|A|471
9MTP|1|1A|A|472
9MTP|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23