J3_9MTP_053

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

9MTP|1|2A|G|2833, 9MTP|1|2A|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTP_053 not in the Motif Atlas

Geometric match to J3_9DFE_019

Geometric discrepancy: 0.0684

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9MTP|1|2A|C|2814
9MTP|1|2A|C|2815
*
9MTP|1|2A|G|2831
9MTP|1|2A|U|2832
9MTP|1|2A|G|2833
9MTP|1|2A|G|2834
9MTP|1|2A|A|2835
9MTP|1|2A|U|2836
*
9MTP|1|2A|A|2882
9MTP|1|2A|A|2883
9MTP|1|2A|U|2884
9MTP|1|2A|C|2885
9MTP|1|2A|G|2886

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17