J3_9MTP_060

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9MTP|1|2a|U|871, 9MTP|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTP_060 not in the Motif Atlas

Geometric match to J3_4LFB_001

Geometric discrepancy: 0.0666

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9MTP|1|2a|C|826
9MTP|1|2a|U|827
9MTP|1|2a|A|828
9MTP|1|2a|G|829
*
9MTP|1|2a|C|857
9MTP|1|2a|G|858
9MTP|1|2a|A|859
9MTP|1|2a|A|860
9MTP|1|2a|G|861
*
9MTP|1|2a|C|868
9MTP|1|2a|G|869
9MTP|1|2a|U|870
9MTP|1|2a|U|871
9MTP|1|2a|A|872
9MTP|1|2a|A|873
9MTP|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5

Chain 2h

30S ribosomal protein S8