J3_9MTQ_040

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9MTQ|1|2A|U|448, 9MTQ|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTQ_040 not in the Motif Atlas

Geometric match to J3_9DFE_003

Geometric discrepancy: 0.0635

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

9MTQ|1|2A|C|32
9MTQ|1|2A|U|33
9MTQ|1|2A|C|34
9MTQ|1|2A|G|35
*
9MTQ|1|2A|C|445
9MTQ|1|2A|G|446
9MTQ|1|2A|A|447
9MTQ|1|2A|U|448
9MTQ|1|2A|A|449
9MTQ|1|2A|G|450
9MTQ|1|2A|C|451
9MTQ|1|2A|G|452
9MTQ|1|2A|C|453
9MTQ|1|2A|A|454
9MTQ|1|2A|C|455
9MTQ|1|2A|C|456
9MTQ|1|2A|A|457
9MTQ|1|2A|G|458
9MTQ|1|2A|U|459
9MTQ|1|2A|A|460
9MTQ|1|2A|C|461
*
9MTQ|1|2A|G|468
9MTQ|1|2A|G|469
9MTQ|1|2A|A|470
9MTQ|1|2A|A|471
9MTQ|1|2A|A|472
9MTQ|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23