3D structure

PDB id
9MTQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
9MTQ|1|2a|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9MTQ_060 not in the Motif Atlas
Geometric match to J3_4LFB_012
Geometric discrepancy: 0.086
The information below is about J3_4LFB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

9MTQ|1|2a|U|672
9MTQ|1|2a|G|673
*
9MTQ|1|2a|C|717
9MTQ|1|2a|G|718
9MTQ|1|2a|C|719
9MTQ|1|2a|C|720
9MTQ|1|2a|G|721
9MTQ|1|2a|A|722
9MTQ|1|2a|U|723
9MTQ|1|2a|G|724
9MTQ|1|2a|G|725
*
9MTQ|1|2a|C|732
9MTQ|1|2a|A|733
9MTQ|1|2a|G|734

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2f
30S ribosomal protein S6
Chain 2k
30S ribosomal protein S11
Chain 2o
30S ribosomal protein S15
Chain 2r
30S ribosomal protein S18

Coloring options:


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