J3_9MTQ_061

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9MTQ|1|2a|U|871, 9MTQ|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTQ_061 not in the Motif Atlas

Geometric match to J3_4LFB_001

Geometric discrepancy: 0.0695

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

9MTQ|1|2a|C|826
9MTQ|1|2a|U|827
9MTQ|1|2a|A|828
9MTQ|1|2a|G|829
*
9MTQ|1|2a|C|857
9MTQ|1|2a|G|858
9MTQ|1|2a|A|859
9MTQ|1|2a|A|860
9MTQ|1|2a|G|861
*
9MTQ|1|2a|C|868
9MTQ|1|2a|G|869
9MTQ|1|2a|U|870
9MTQ|1|2a|U|871
9MTQ|1|2a|A|872
9MTQ|1|2a|A|873
9MTQ|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5

Chain 2h

30S ribosomal protein S8