J3_9MTQ_072

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

9MTQ|1|2a|U|1240, 9MTQ|1|2a|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTQ_072 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.0974

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9MTQ|1|2a|C|1237
9MTQ|1|2a|A|1238
9MTQ|1|2a|A|1239
9MTQ|1|2a|U|1240
9MTQ|1|2a|G|1241
*
9MTQ|1|2a|C|1296
9MTQ|1|2a|C|1297
9MTQ|1|2a|C|1298
9MTQ|1|2a|A|1299
9MTQ|1|2a|G|1300
9MTQ|1|2a|U|1301
9MTQ|1|2a|U|1302
9MTQ|1|2a|C|1303
*
9MTQ|1|2a|G|1334
9MTQ|1|2a|C|1335
9MTQ|1|2a|C|1336
9MTQ|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx