J3_9MTS_038

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

9MTS|1|2A|U|504, 9MTS|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTS_038 not in the Motif Atlas

Geometric match to J3_9DFE_002

Geometric discrepancy: 0.0602

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9MTS|1|2A|G|30
9MTS|1|2A|C|31
*
9MTS|1|2A|G|474
9MTS|1|2A|U|475
9MTS|1|2A|G|476
9MTS|1|2A|A|477
9MTS|1|2A|A|478
9MTS|1|2A|A|479
9MTS|1|2A|A|480
9MTS|1|2A|G|481
9MTS|1|2A|A|482
9MTS|1|2A|A|483
9MTS|1|2A|C|484
*
9MTS|1|2A|G|496
9MTS|1|2A|A|497
9MTS|1|2A|G|498
9MTS|1|2A|U|499
9MTS|1|2A|G|500
9MTS|1|2A|A|501
9MTS|1|2A|A|502
9MTS|1|2A|A|503
9MTS|1|2A|U|504
9MTS|1|2A|A|505
9MTS|1|2A|G|506
9MTS|1|2A|A|507
9MTS|1|2A|G|508
9MTS|1|2A|C|509
9MTS|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24