J3_9MTS_039

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9MTS|1|2A|U|448, 9MTS|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTS_039 not in the Motif Atlas

Geometric match to J3_9DFE_003

Geometric discrepancy: 0.0847

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

9MTS|1|2A|C|32
9MTS|1|2A|U|33
9MTS|1|2A|C|34
9MTS|1|2A|G|35
*
9MTS|1|2A|C|445
9MTS|1|2A|G|446
9MTS|1|2A|A|447
9MTS|1|2A|U|448
9MTS|1|2A|A|449
9MTS|1|2A|G|450
9MTS|1|2A|C|451
9MTS|1|2A|G|452
9MTS|1|2A|C|453
9MTS|1|2A|A|454
9MTS|1|2A|C|455
9MTS|1|2A|C|456
9MTS|1|2A|A|457
9MTS|1|2A|G|458
9MTS|1|2A|U|459
9MTS|1|2A|A|460
9MTS|1|2A|C|461
*
9MTS|1|2A|G|468
9MTS|1|2A|G|469
9MTS|1|2A|A|470
9MTS|1|2A|A|471
9MTS|1|2A|A|472
9MTS|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23