J3_9N2B_002

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

9N2B|1|16|C|48, 9N2B|1|16|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2B_002 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0563

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9N2B|1|16|G|46
9N2B|1|16|C|47
9N2B|1|16|C|48
9N2B|1|16|U|49
9N2B|1|16|A|50
9N2B|1|16|A|51
9N2B|1|16|C|52
*
9N2B|1|16|G|359
9N2B|1|16|G|360
9N2B|1|16|G|361
9N2B|1|16|G|362
9N2B|1|16|A|363
9N2B|1|16|A|364
9N2B|1|16|U|365
9N2B|1|16|A|366
9N2B|1|16|U|367
*
9N2B|1|16|A|393
9N2B|1|16|G|394
9N2B|1|16|C|395

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SL

Small ribosomal subunit protein uS12

Chain SP

30S ribosomal protein S16