J3_9N2B_004
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 9N2B|1|16|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2B_004 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.0734
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9N2B|1|16|C|586
9N2B|1|16|G|587
9N2B|1|16|G|588
*
9N2B|1|16|C|651
9N2B|1|16|U|652
9N2B|1|16|U|653
9N2B|1|16|G|654
9N2B|1|16|A|655
*
9N2B|1|16|U|751
9N2B|1|16|G|752
9N2B|1|16|A|753
9N2B|1|16|C|754
9N2B|1|16|G|755
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain SH
- 30S ribosomal protein S8
- Chain SL
- Small ribosomal subunit protein uS12
- Chain SO
- 30S ribosomal protein S15
- Chain SQ
- 30S ribosomal protein S17
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