J3_9N2B_006

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9N2B|1|16|U|871, 9N2B|1|16|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2B_006 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0511

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9N2B|1|16|C|826
9N2B|1|16|U|827
9N2B|1|16|U|828
9N2B|1|16|G|829
*
9N2B|1|16|C|857
9N2B|1|16|G|858
9N2B|1|16|G|859
9N2B|1|16|A|860
9N2B|1|16|G|861
*
9N2B|1|16|C|868
9N2B|1|16|G|869
9N2B|1|16|U|870
9N2B|1|16|U|871
9N2B|1|16|A|872
9N2B|1|16|A|873
9N2B|1|16|G|874

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SB

30S ribosomal protein S2

Chain SH

30S ribosomal protein S8

Chain SU

30S ribosomal protein S21