3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
9N2B|1|23|A|504, 9N2B|1|23|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9N2B_019 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.0889
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

9N2B|1|23|G|30
9N2B|1|23|C|31
*
9N2B|1|23|G|474
9N2B|1|23|C|475
9N2B|1|23|G|476
9N2B|1|23|A|477
9N2B|1|23|A|478
9N2B|1|23|A|479
9N2B|1|23|A|480
9N2B|1|23|G|481
9N2B|1|23|A|482
9N2B|1|23|A|483
9N2B|1|23|C|484
*
9N2B|1|23|G|496
9N2B|1|23|A|497
9N2B|1|23|G|498
9N2B|1|23|U|499
9N2B|1|23|G|500
9N2B|1|23|A|501
9N2B|1|23|A|502
9N2B|1|23|A|503
9N2B|1|23|A|504
9N2B|1|23|A|505
9N2B|1|23|G|506
9N2B|1|23|A|507
9N2B|1|23|A|508
9N2B|1|23|C|509
9N2B|1|23|C|510

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LT
50S ribosomal protein L20
Chain LV
Large ribosomal subunit protein uL22
Chain LX
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6051 s