J3_9N2B_026

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9N2B|1|23|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2B_026 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1159

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9N2B|1|23|C|1306
9N2B|1|23|A|1307
9N2B|1|23|A|1308
9N2B|1|23|G|1309
*
9N2B|1|23|C|1605
9N2B|1|23|C|1606
9N2B|1|23|C|1607
9N2B|1|23|A|1608
9N2B|1|23|A|1609
9N2B|1|23|A|1610
9N2B|1|23|C|1611
*
9N2B|1|23|G|1620
9N2B|1|23|U|1621
9N2B|1|23|G|1622

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain Lh

50S ribosomal protein L34