3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9N2B_028 not in the Motif Atlas
Homologous match to J3_5J7L_069
Geometric discrepancy: 0.0604
The information below is about J3_5J7L_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

9N2B|1|23|G|1424
9N2B|1|23|G|1425
9N2B|1|23|G|1426
9N2B|1|23|A|1427
9N2B|1|23|C|1428
9N2B|1|23|G|1429
*
9N2B|1|23|C|1564
9N2B|1|23|C|1565
*
9N2B|1|23|G|1568
9N2B|1|23|A|1569
9N2B|1|23|A|1570
9N2B|1|23|A|1571
9N2B|1|23|A|1572
9N2B|1|23|G|1573
9N2B|1|23|C|1574

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LB
50S ribosomal protein L2

Coloring options:


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