J3_9N2C_025

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9N2C|1|23|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2C_025 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0617

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9N2C|1|23|C|1298
9N2C|1|23|G|1299
9N2C|1|23|G|1300
9N2C|1|23|A|1301
9N2C|1|23|A|1302
9N2C|1|23|G|1303
*
9N2C|1|23|C|1625
9N2C|1|23|A|1626
9N2C|1|23|G|1627
*
9N2C|1|23|C|1639
9N2C|1|23|A|1640
9N2C|1|23|A|1641
9N2C|1|23|G|1642

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains