J3_9N3I_001

3D structure

PDB id

9N3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vibrio cholerae Glycine Riboswitch - glycine bound at 2.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGAGAG*CG*CAAAAGGAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N3I_001 not in the Motif Atlas

Homologous match to J3_3OXE_001

Geometric discrepancy: 0.1195

The information below is about J3_3OXE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58957.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-F-F-F-tHS-cWW

Number of instances in this motif group

1

Unit IDs

9N3I|1|A|G|148
9N3I|1|A|G|149
9N3I|1|A|A|150
9N3I|1|A|G|151
9N3I|1|A|A|152
9N3I|1|A|G|153
*
9N3I|1|A|C|169
9N3I|1|A|G|170
*
9N3I|1|A|C|215
9N3I|1|A|A|216
9N3I|1|A|A|217
9N3I|1|A|A|218
9N3I|1|A|A|219
9N3I|1|A|G|220
9N3I|1|A|G|221
9N3I|1|A|A|222
9N3I|1|A|C|223

Current chains

Chain A

Glycine Riboswitch

Nearby chains