J3_9N70_008

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

9N70|1|L1|U|1473, 9N70|1|L1|G|1539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N70_008 not in the Motif Atlas

Homologous match to J3_9PN5_043

Geometric discrepancy: 0.1489

The information below is about J3_9PN5_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.4

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

7

Unit IDs

9N70|1|L1|C|1470
9N70|1|L1|A|1471
9N70|1|L1|C|1472
9N70|1|L1|U|1473
9N70|1|L1|G|1474
*
9N70|1|L1|C|1533
9N70|1|L1|G|1534
9N70|1|L1|U|1535
9N70|1|L1|G|1536
9N70|1|L1|C|1537
9N70|1|L1|U|1538
9N70|1|L1|G|1539
9N70|1|L1|G|1540
*
9N70|1|L1|C|1571
9N70|1|L1|G|1572
9N70|1|L1|A|1573
9N70|1|L1|G|1574

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L3

40S ribosomal protein S18-A

Chain L5

40S ribosomal protein S5

Chain LJ

U3 small nucleolar RNA-associated protein 15

Chain SK

Ribosomal RNA small subunit methyltransferase NEP1