J3_9N9J_012

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

9N9J|1|L5|U|2788, 9N9J|1|L5|A|2789, 9N9J|1|L5|U|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|G|2402
9N9J|1|L5|A|2403
9N9J|1|L5|A|2404
9N9J|1|L5|G|2405
*
9N9J|1|L5|C|2785
9N9J|1|L5|C|2786
9N9J|1|L5|A|2787
9N9J|1|L5|U|2788
9N9J|1|L5|A|2789
9N9J|1|L5|U|2790
9N9J|1|L5|C|2791
*
9N9J|1|L5|G|2800
9N9J|1|L5|U|2801
9N9J|1|L5|C|2802

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lg

Large ribosomal subunit protein eL34

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

Large ribosomal subunit protein eL39