J3_9N9J_021

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9N9J|1|L5|U|4882, 9N9J|1|L5|A|4938, 9N9J|1|L5|C|4940, 9N9J|1|L5|A|4943, 9N9J|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N9J|1|L5|G|4751
9N9J|1|L5|U|4752
9N9J|1|L5|U|4753
9N9J|1|L5|G|4754
*
9N9J|1|L5|C|4879
9N9J|1|L5|C|4880
9N9J|1|L5|U|4881
9N9J|1|L5|U|4882
9N9J|1|L5|C|4883
*
9N9J|1|L5|G|4936
9N9J|1|L5|C|4937
9N9J|1|L5|A|4938
9N9J|1|L5|C|4939
9N9J|1|L5|C|4940
9N9J|1|L5|G|4941
9N9J|1|L5|C|4942
9N9J|1|L5|A|4943
9N9J|1|L5|C|4944
9N9J|1|L5|G|4945
9N9J|1|L5|U|4946
9N9J|1|L5|U|4947
9N9J|1|L5|C|4948

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

Large ribosomal subunit protein eL14

Chain LO

Large ribosomal subunit protein uL13

Chain Lf

Large ribosomal subunit protein eL33