J3_9NDP_001

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9NDP|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|C|112
9NDP|1|5|A|113
9NDP|1|5|G|114
9NDP|1|5|C|115
9NDP|1|5|G|116
*
9NDP|1|5|C|155
9NDP|1|5|G|156
9NDP|1|5|U|157
9NDP|1|5|A|158
9NDP|1|5|C|159
9NDP|1|5|G|160
*
9NDP|1|5|C|275
9NDP|1|5|C|276
9NDP|1|5|G|277
9NDP|1|5|G|278

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain L

eL13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36