J3_9NDP_012

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9NDP|1|5|A|2396, 9NDP|1|5|U|2398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|C|2393
9NDP|1|5|G|2394
9NDP|1|5|A|2395
9NDP|1|5|A|2396
9NDP|1|5|G|2397
9NDP|1|5|U|2398
9NDP|1|5|G|2399
*
9NDP|1|5|C|2805
9NDP|1|5|A|2806
9NDP|1|5|A|2807
*
9NDP|1|5|U|2819
9NDP|1|5|C|2820
9NDP|1|5|U|2821
9NDP|1|5|G|2822

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain g

60S ribosomal protein L34